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Dfs2

Dfs2#

Dfs2 has two spatial dimensions and adding a correct coordinate reference is important.

See Dfs2 in MIKE IO Documentation

See DFS - Reference manual

import numpy as np
import matplotlib.pyplot as plt
import mikeio

Reading data#

ds = mikeio.read("data/gebco_sound.dfs2")
ds

<mikeio.Dataset>
dims: (time:1, y:264, x:216)
time: 2020-05-15 11:04:52 (time-invariant)
geometry: Grid2D (ny=264, nx=216)
items:
  0:  Elevation <Total Water Depth> (meter)

type(ds)

mikeio.dataset._dataset.Dataset

ds.shape

(1, 264, 216)

elevation = ds['Elevation']
type(elevation)

mikeio.dataset._dataarray.DataArray

elevation.shape

(1, 264, 216)

elevation.plot()

<Axes: xlabel='Longitude [degrees]', ylabel='Latitude [degrees]'>
_images/e811d01cd8479999664f751773a77040d01d3bb1d58872b7fecbb4338fefab3c.png

Spatial axes#

ds.geometry

<mikeio.Grid2D>
x: [12.2, 12.21, ..., 13.1] (nx=216, dx=0.004167)
y: [55.2, 55.21, ..., 56.3] (ny=264, dy=0.004167)
projection: LONG/LAT

Extract data at location#

stn = 12.74792, 55.865
da_stn = elevation.interp(x=stn[0], y=stn[1])
da_stn

<mikeio.DataArray>
name: Elevation
dims: (time:1)
time: 2020-05-15 11:04:52 (time-invariant)
geometry: GeometryPoint2D(x=12.74792, y=55.865)
values: [-42.69764539]

da_stn.values

array([-42.69764539])

elevation.plot()
plt.scatter(stn[0],stn[1],marker='*',s=500,c='black')
plt.text(12.85, 56.0, "Sweden")
plt.text(12.3, 55.8, "Denmark")

Text(12.3, 55.8, 'Denmark')
_images/c445ecd4ba1babc12ff3b04f002cb0c8e3ef6a2159a4cb2d980dc54e90bb6d42.png

Inline exercise#

Find the coordinates of the deepest position.

  1. Find the index “idx” of smallest value in “elevation” (hint: np.argmin)

  2. Find the coordinates of idx (hint: geometry.xy is a list of coordinates)

# write your code here

Slicing#

elevation.plot()
plt.axvline(stn[0])
plt.axhline(stn[1])

<matplotlib.lines.Line2D at 0x7f2ec4905850>
_images/25f4784c500159b7173f98f8e493624689cb65487dfff5efe8f66697dda5c912.png 
elevation.sel(y=stn[1]).plot(title="West-East");
_images/08e6146b99b18747376dcee8aa0421c9a30346e89f9b20f82e90a84b1775f31e.png 
elevation.sel(x=stn[0]).plot(title="South-North");
_images/437508520b65dd59a53057cab7dbe3c3b9256a58fc44addf8f42b1e6fc59642a.png

Inline exercise#

  1. Extract the “first” horizontal line using isel()

  2. Find the mean value along this line (hint: use axis="x")

# insert your code here

Writing data#

Geographical coordinates#

data_i = np.arange(24).reshape(2,4,3)
data_i.shape

(2, 4, 3)

plt.imshow(data_i[0]) # first timestep
plt.colorbar()

<matplotlib.colorbar.Colorbar at 0x7f2ec4824150>
_images/72ae9ce1c7b84688fb14bd36717e63c297dd286b95c13fe7ca21b5194a4d7972.png 
grid = mikeio.Grid2D(x0 = 12.0, dx= 1.0, y0= 55.0, dy=1.0, nx=3, ny=4, projection="LONG/LAT")
grid

<mikeio.Grid2D>
x: [12, 13, 14] (nx=3, dx=1)
y: [55, 56, ..., 58] (ny=4, dy=1)
projection: LONG/LAT

Inline exercise#

plot the grid

# insert your code here

Create DataArray#

import pandas as pd

nt = data_i.shape[0]

da = mikeio.DataArray(data = data_i,
                      geometry=grid,
                      time = pd.date_range("2020",periods=nt,freq='D'),
                      item= mikeio.ItemInfo("Example", mikeio.EUMType.Elevation))

da

<mikeio.DataArray>
name: Example
dims: (time:2, y:4, x:3)
time: 2020-01-01 00:00:00 - 2020-01-02 00:00:00 (2 records)
geometry: Grid2D (ny=4, nx=3)

ds = mikeio.Dataset([da])
ds

<mikeio.Dataset>
dims: (time:2, y:4, x:3)
time: 2020-01-01 00:00:00 - 2020-01-02 00:00:00 (2 records)
geometry: Grid2D (ny=4, nx=3)
items:
  0:  Example <Elevation> (meter)

ds.to_dfs("example_geo.dfs2")

Projected coordinates#

Projection string in WKT format. Use MIKE Zero for formatting. Some shorthands are available for UTM zones, e.g. UTM-32.

pgrid = mikeio.Grid2D(x0 = 337100.0, dx= 10000.0, y0= 6122900.0, dy=10000.0, nx=3, ny=4, projection="UTM-32")
pgrid

<mikeio.Grid2D>
x: [3.371e+05, 3.471e+05, 3.571e+05] (nx=3, dx=1e+04)
y: [6.123e+06, 6.133e+06, ..., 6.153e+06] (ny=4, dy=1e+04)
projection: UTM-32

pda = mikeio.DataArray(data = data_i,
                       geometry=pgrid,
                       time = pd.date_range("2020",periods=nt,freq='D'),
                       item= mikeio.ItemInfo("Example", mikeio.EUMType.Elevation))

pda

<mikeio.DataArray>
name: Example
dims: (time:2, y:4, x:3)
time: 2020-01-01 00:00:00 - 2020-01-02 00:00:00 (2 records)
geometry: Grid2D (ny=4, nx=3)

pda.plot()

<Axes: xlabel='Easting [m]', ylabel='Northing [m]'>
_images/1ea526ae71c2c916c124bdcfc66b0c21a63ffd440d4e6a50120df6393d51b71b.png 
pda.to_dfs("example_proj.dfs2")

import utils

utils.sysinfo()

    System: 3.11.9 (main, Apr  2 2024, 15:19:53) [GCC 11.4.0]
    NumPy: 1.26.4
    Pandas: 2.2.2
    MIKE IO: 1.7.1
    Last modified: 2024-04-11 17:10:53.823415
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